MolNFT v1 · #46677 · protein

Crystal structure of a putative DNA-binding protein (REUT_B4095) from ralstonia eutropha JMP134 at 1.70 a resolution

2OBP: “Crystal structure of a putative DNA-binding protein (REUT_B4095) from ralstonia eutropha JMP134 at 1.70 a…”. X-ray diffraction, 2 ligands (NO3, CL), 1 pocket (best druggability 0.45). MolNFT v1 #46677 on GenesisL1: 3D structure…

PDB: 2OBP
Type: protein
Length: 162 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative DNA-binding protein
UniProt: Q46TT3
Ligands: NO3, CL
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Putative DNA-binding protein	protein	81	54% helix, 14% strand	Q46TT3

Ligands and binding sites

NO3 · Nitrate ion · ion · chains A, B
CL · Chloride ion · ion · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	155	0.45	0.76	22	CL

Interfaces

1 interface between chains.

A–B · 505 Å² buried · 11 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

2OBP · Crystal structure of a putative dna-binding protein (reut_b4095) from ralstonia eutropha… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q46TT3
Elsewhere: RCSB PDB 2OBP · PDBe 2OBP · UniProt Q46TT3

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