MolNFT v1 · #46605 · protein
Crystal structure of aqpz mutant T183C.
2O9D · Aquaporin Z: “Crystal structure of aqpz mutant T183C.”. X-ray diffraction, 2 ligands (HSG, HSH), 5 pockets (best druggability 0.52). MolNFT v1 #46605 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2O9D
- Type
- protein
- Length
- 464 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aquaporin Z
- UniProt
- P60844
- Ligands
- HSG, HSH
- Pockets
- 5 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aquaporin Z | protein | 231 | 73% helix, 0% strand | P60844 |
| B | Aquaporin Z | protein | 233 | 70% helix, 0% strand | P60844 |
Ligands and binding sites
- HSG · octyl alpha-L-altropyranoside · ligand · 2 copies · chains A, B
- HSH · octyl beta-D-galactopyranoside · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.52 | 0.80 | 30 | empty |
| 2 | 117 | 0.49 | 0.79 | 27 | empty |
| 3 | 121 | 0.42 | 0.76 | 30 | empty |
| 4 | 104 | 0.40 | 0.76 | 21 | empty |
| 5 | 101 | 0.34 | 0.73 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 134 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P60844
- Elsewhere: RCSB PDB 2O9D · PDBe 2O9D · UniProt P60844
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