MolNFT v1 · #46540 · protein

The X-ray crystal structure of a thermophilic cellobiose binding protein bound with cellobiose

2O7I · Oligopeptide ABC transporter, periplasmic oligopeptide…: “The X-ray crystal structure of a thermophilic cellobiose binding protein bound with cellobiose”. X-ray diffraction, 1 ligand (BGC), 2 pockets (best druggability 0.86). MolNFT…

PDB: 2O7I
Type: protein
Length: 582 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Oligopeptide ABC transporter, periplasmic oligopeptide- binding protein
UniProt: Q9WXN8
Ligands: BGC
Pockets: 2 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Oligopeptide ABC transporter, periplasmic oligopeptide- binding protein	protein	582	32% helix, 19% strand	Q9WXN8

Ligands and binding sites

BGC · beta-D-glucopyranose · sugar · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1038	0.86	0.87	87	BGC
2	124	0.37	0.73	22	empty

Compared structures

2O7I · The X-ray crystal structure of a thermophilic cellobiose binding protein bound with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9WXN8
Elsewhere: RCSB PDB 2O7I · PDBe 2O7I · UniProt Q9WXN8

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