MolNFT v1 · #46518 · protein

Structural diversity of the hagfish variable lymphocyte receptors B59

2O6S · Variable lymphocyte receptor B: “Structural diversity of the hagfish variable lymphocyte receptors B59”. X-ray diffraction, 1 pocket (best druggability 0.67). MolNFT v1 #46518 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 2O6S
Type: protein
Length: 416 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Variable lymphocyte receptor B
UniProt: Q4G1L3
Pockets: 1 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Variable lymphocyte receptor B	protein	208	6% helix, 15% strand	Q4G1L3

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	505	0.67	0.78	51	empty

Interfaces

1 interface between chains.

A–B · 351 Å² buried · 7 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

2O6S · Structural diversity of the hagfish Variable Lymphocyte Receptors B59 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4G1L3
Elsewhere: RCSB PDB 2O6S · PDBe 2O6S · UniProt Q4G1L3

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