MolNFT v1 · #46494 · protein
Crystal structure of a protein with unknown function from DUF3598 family (NPUN_R4044) from nostoc punctiforme pcc 73102 at 1.75 a resolution
2O62 · Hypothetical protein: “Crystal structure of a protein with unknown function from DUF3598 family (NPUN_R4044) from nostoc punctiforme…”. X-ray diffraction, 1 ligand (CL), 5 pockets (best druggability 0.78). MolNFT v1 #46494 on…
- PDB
- 2O62
- Type
- protein
- Length
- 537 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- Ligands
- CL
- Pockets
- 5 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein | protein | 269 | 4% helix, 59% strand | — |
| B | Hypothetical protein | protein | 268 | 5% helix, 58% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 908 | 0.78 | 0.81 | 69 | GOL |
| 2 | 948 | 0.76 | 0.79 | 60 | GOL |
| 3 | 400 | 0.73 | 0.83 | 48 | GOL |
| 4 | 418 | 0.68 | 0.80 | 51 | GOL |
| 5 | 57 | 0.32 | 0.76 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 818 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 2O62 · Crystal structure of a protein with unknown function from DUF3598 family (NPUN_R4044)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2O62 · PDBe 2O62
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