MolNFT v1 · #46395 · protein
Crystal structure of protein DVU1097 from desulfovibrio vulgaris hildenborough, pfam DUF375
2O34 · Hypothetical protein: “Crystal structure of protein DVU1097 from desulfovibrio vulgaris hildenborough, pfam DUF375”. X-ray diffraction, 1 ligand (NA), 4 pockets (best druggability 0.63). MolNFT v1 #46395 on GenesisL1: 3D structure…
- PDB
- 2O34
- Type
- protein
- Length
- 480 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- Q72D34
- Ligands
- NA
- Pockets
- 4 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein | protein | 249 | 33% helix, 29% strand | Q72D34 |
| B | Hypothetical protein | protein | 231 | 35% helix, 27% strand | Q72D34 |
Ligands and binding sites
- NA · Sodium ion · metal · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 678 | 0.63 | 0.74 | 72 | empty |
| 2 | 310 | 0.61 | 0.79 | 33 | empty |
| 3 | 156 | 0.41 | 0.74 | 24 | empty |
| 4 | 59 | 0.30 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 578 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 15 modified (engineered).
Compared structures
- 2O34 · Crystal structure of protein DVU1097 from Desulfovibrio vulgaris Hildenborough, Pfam… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72D34
- Elsewhere: RCSB PDB 2O34 · PDBe 2O34 · UniProt Q72D34
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