MolNFT v1 · #46304 · protein

T4 GP17 ATPase domain mutant complexed with ADP

2O0J · DNA packaging protein GP17: “T4 GP17 ATPase domain mutant complexed with ADP”. X-ray diffraction, 1 ligand (ADP), 5 pockets (best druggability 0.57). MolNFT v1 #46304 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2O0J
Type: protein
Length: 360 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA packaging protein GP17
UniProt: P17312
Ligands: ADP
Pockets: 5 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA packaging protein GP17	protein	360	35% helix, 21% strand	P17312

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	263	0.57	0.77	34	ADP
2	200	0.49	0.76	32	empty
3	57	0.46	0.84	18	empty
4	79	0.42	0.79	13	empty
5	113	0.41	0.76	21	empty

Compared structures

2O0J · T4 gp17 ATPase domain mutant complexed with ADP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P17312
Elsewhere: RCSB PDB 2O0J · PDBe 2O0J · UniProt P17312

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