MolNFT v1 · #4603 · protein
Thermus thermophilus cytochrome C552 synthesized by escherichia COLI
1DT1: “Thermus thermophilus cytochrome C552 synthesized by escherichia COLI”. X-ray diffraction, 1 ligand (HEC), 1 pocket (best druggability 0.75). MolNFT v1 #4603 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1DT1
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C552
- UniProt
- Q5SME3
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C552 | protein | 129 | 49% helix, 9% strand | Q5SME3 |
Ligands and binding sites
- HEC · Heme C · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 212 | 0.75 | 0.89 | 35 | HEC |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SME3
- Elsewhere: RCSB PDB 1DT1 · PDBe 1DT1 · UniProt Q5SME3
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