MolNFT v1 · #4519 · RNA

Crystal structure of helix II of the X. laevis somatic 5S rRNA with a cytosine bulge in two conformations

1DQH · RNA (5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3'): “Crystal structure of helix II of the X. laevis somatic 5S rRNA with a cytosine bulge in two conformations”. X-ray diffraction. MolNFT v1 #4519 on GenesisL1: 3D structure, binding sites and…

PDB: 1DQH
Type: RNA
Length: 19 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3'); RNA (5'-R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3')

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (5'-R(GPCPCPAPCPCPCPUP*G)-3')	rna	9	—	—
B	RNA (5'-R(CPAPGPGPGPUPCPGPGPC)-3')	rna	10	—	—

Interfaces

1 interface between chains.

A–B · 445 Å² buried · 38 hydrogen bonds · nucleic-nucleic

Compared structures

1DQH · Crystal structure of helix II of the X. laevis somatic 5S rRNA with a cytosine bulge in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1DQH · PDBe 1DQH

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