MolNFT v1 · #44832 · protein

Solution structure of peptidyl-tRNA hyrolase from vibrio cholerae

2MJL · Peptidyl-tRNA hydrolase: “Solution structure of peptidyl-tRNA hyrolase from vibrio cholerae”. Solution nmr, 2 pockets (best druggability 0.38). MolNFT v1 #44832 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2MJL
Type: protein
Length: 197 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptidyl-tRNA hydrolase
EC: 3.1.1.29
UniProt: C3LPI9
Pockets: 2 · best druggability 0.38

Structure

solution nmr · 1 distinct chain · 39% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptidyl-tRNA hydrolase (EC 3.1.1.29)	protein	197	39% helix, 22% strand	C3LPI9

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.38	0.80	17	empty
2	90	0.35	0.74	20	empty

Compared structures

2MJL · Solution structure of peptidyl-tRNA hyrolase from Vibrio cholerae · the same entry in another collection · chain A against A, TM-score 1.00
C3LPI9 · AlphaFold monomer V2.0 prediction for peptidyl-tRNA hydrolase (C3LPI9) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C3LPI9
Elsewhere: RCSB PDB 2MJL · PDBe 2MJL · UniProt C3LPI9

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