MolNFT v1 · #44622 · protein

NMR structure of human SP140 phd finger trans conformer

2MD7 · Nuclear body protein SP140: “NMR structure of human SP140 phd finger trans conformer”. Solution nmr, 1 ligand (ZN). MolNFT v1 #44622 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2MD7
Type: protein
Length: 56 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nuclear body protein SP140
UniProt: Q13342
Ligands: ZN

Structure

solution nmr · 1 distinct chain · 34% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Nuclear body protein SP140	protein	56	34% helix, 0% strand	Q13342

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

2MD7 · NMR structure of human Sp140 PHD finger trans conformer · the same entry in another collection · chain B against B, TM-score 1.00
Q13342 · AlphaFold monomer V2.0 prediction for nuclear body protein SP140 (Q13342) · a predicted model of the same protein · chain B against A, TM-score 0.44

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q13342
Elsewhere: RCSB PDB 2MD7 · PDBe 2MD7 · UniProt Q13342

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