MolNFT v1 · #44354 · DNA
Refined NMR solution structure of metal-modified DNA
2M54 · DNA (5'-D(*TP*TP*AP*AP*TP*TP*TP*(D33)P*(D33)P*(D33)…: “Refined NMR solution structure of metal-modified DNA”. Solution nmr, 1 ligand (AG). MolNFT v1 #44354 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2M54
- Type
- DNA
- Length
- 34 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*TP*TP*AP*AP*TP*TP*TP*(D33)P*(D33)P*(D33) P*AP*AP*AP*TP*TP*AP*A)-3')
- Ligands
- AG
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*TP*TP*AP*AP*TP*TP*TP*(D33)P*(D33)P*(D33) P*AP*AP*AP*TP*TP*AP*A)-3') | dna | 17 | — | — |
Ligands and binding sites
- AG · Silver ion · metal · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 654 Ų buried · 40 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 6 modified (nucleotide modification).
Compared structures
- 2M54 · Refined NMR solution structure of metal-modified DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2M54 · PDBe 2M54
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