MolNFT v1 · #4428 · DNA

RNA/DNA dodecamer R(GC)D(GTATACGC) with magnesium binding sites

1DNT · DNA/RNA (5'-R(*GP*CP)-D(*GP*TP*AP*TP*AP*CP*GP*C)-3'): “RNA/DNA dodecamer R(GC)D(GTATACGC) with magnesium binding sites”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #4428 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1DNT
Type: DNA
Length: 20 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA/RNA (5'-R(*GP*CP)-D(*GP*TP*AP*TP*AP*CP*GP*C)-3')
Ligands: MG

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA/RNA (5'-R(GPCP)-D(GPTPAPTPAPCPGPC)-3')	dna	10	—	—

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 477 Å² buried · 42 hydrogen bonds · nucleic-nucleic

Compared structures

1DNT · RNA/DNA dodecamer R(GC)D(GTATACGC) with magnesium binding sites · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1DNT · PDBe 1DNT

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.