MolNFT v1 · #44169 · protein
Structure of the biofilm matrix promoter abba from B. subtilis
2LZF · Uncharacterized protein ykzf: “Structure of the biofilm matrix promoter abba from B. subtilis”. Solution nmr, 2 pockets (best druggability 0.58). MolNFT v1 #44169 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2LZF
- Type
- protein
- Length
- 136 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein ykzf
- UniProt
- O31697
- Pockets
- 2 · best druggability 0.58
Structure
solution nmr · 1 distinct chain · 50% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein ykzf | protein | 68 | 50% helix, 0% strand | O31697 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 182 | 0.58 | 0.81 | 28 | empty |
| 2 | 57 | 0.38 | 0.80 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 800 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 2LZF · Structure of the biofilm matrix promoter AbbA from B. subtilis · the same entry in another collection · chain A against A, TM-score 1.00
- O31697 · AlphaFold monomer V2.0 prediction for uncharacterized protein ykzf (O31697) · a predicted model of the same protein · chain A against A, TM-score 0.52
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O31697
- Elsewhere: RCSB PDB 2LZF · PDBe 2LZF · UniProt O31697
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