MolNFT v1 · #44073 · DNA

NMR structure of the self-complementary 10 mer DNA duplex 5'- ggatatatcc-3' in complex with netropsin

2LWH · DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'): “NMR structure of the self-complementary 10 mer DNA duplex 5'- ggatatatcc-3' in complex with netropsin”. Solution nmr, 1 ligand (NT). MolNFT v1 #44073 on GenesisL1: 3D structure, binding…

PDB: 2LWH
Type: DNA
Length: 20 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3')
Ligands: NT

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
1, 2	DNA (5'-D(GPGPAPTPAPTPAPTPCPC)-3')	dna	10	—	—

Ligands and binding sites

NT · Netropsin · ligand · chains 1, 2

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

1–2 · 418 Å² buried · 39 hydrogen bonds · nucleic-nucleic

Compared structures

2LWH · NMR Structure of the Self-Complementary 10 mer DNA Duplex 5'-GGATATATCC-3' in Complex… · the same entry in another collection · chain 1 against 1, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2LWH · PDBe 2LWH

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.