MolNFT v1 · #43917 · protein

Assignment of E COLI periplasmic protein ymgd

2LRV · Uncharacterized protein ymgd: “Assignment of E COLI periplasmic protein ymgd”. Solution nmr, 1 pocket (best druggability 0.46). MolNFT v1 #43917 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2LRV
Type: protein
Length: 84 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein ymgd
UniProt: P0AB46
Pockets: 1 · best druggability 0.46

Structure

solution nmr · 1 distinct chain · 70% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein ymgd	protein	84	70% helix, 2% strand	P0AB46

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	69	0.46	0.83	21	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

2LRV · Assignment of E coli periplasmic protein YmgD · the same entry in another collection · chain A against A, TM-score 1.00
P0AB46 · AlphaFold monomer V2.0 prediction for uncharacterized protein ymgd (P0AB46) · a predicted model of the same protein · chain A against A, TM-score 0.73

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0AB46
Elsewhere: RCSB PDB 2LRV · PDBe 2LRV · UniProt P0AB46

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