MolNFT v1 · #43736 · protein

Solution NMR structure of lysine-specific demethylase lid from drosophila melanogaster, northeast structural genomics consortium target FR824D

2LM1: “Solution NMR structure of lysine-specific demethylase lid from drosophila melanogaster, northeast structural…”. Solution nmr, 1 pocket (best druggability 0.65). MolNFT v1 #43736 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 2LM1
Type: protein
Length: 107 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysine-specific demethylase lid
UniProt: Q9VMJ7
Pockets: 1 · best druggability 0.65

Structure

solution nmr · 1 distinct chain · 57% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysine-specific demethylase lid	protein	107	57% helix, 0% strand	Q9VMJ7

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	182	0.65	0.85	28	empty

Compared structures

2LM1 · Solution NMR Structure of Lysine-specific demethylase lid from Drosophila melanogaster… · the same entry in another collection · chain A against A, TM-score 1.00
Q9VMJ7 · AlphaFold monomer V2.0 prediction for lysine-specific demethylase lid (Q9VMJ7) · a predicted model of the same protein · chain A against A, TM-score 0.67

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9VMJ7
Elsewhere: RCSB PDB 2LM1 · PDBe 2LM1 · UniProt Q9VMJ7

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