MolNFT v1 · #4371 · protein
X-ray crystal structure of hemoglobin from the green unicellular alga chlamydomonas eugametos
1DLY: “X-ray crystal structure of hemoglobin from the green unicellular alga chlamydomonas eugametos”. X-ray diffraction, 3 ligands (HEM, SO4, CYN), 1 pocket (best druggability 0.79). MolNFT v1 #4371 on GenesisL1: 3D structure, binding…
- PDB
- 1DLY
- Type
- protein
- Length
- 121 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemoglobin
- UniProt
- Q08753
- Ligands
- HEM, SO4, CYN
- Pockets
- 1 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 64% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hemoglobin | protein | 121 | 64% helix, 0% strand | Q08753 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- CYN · Cyanide ion · ion · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 398 | 0.79 | 0.87 | 42 | CYN, HEM |
Compared structures
- 1DLY · X-ray crystal structure of hemoglobin from the green unicellular alga chlamydomonas… · the same entry in another collection · chain A against A, TM-score 1.00
- Q08753 · AlphaFold monomer V2.0 prediction for group 1 truncated hemoglobin LI637 (Q08753) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08753
- Elsewhere: RCSB PDB 1DLY · PDBe 1DLY · UniProt Q08753
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