MolNFT v1 · #43466 · protein

Solution structure of triheme cytochrome ppca from geobacter sulfurreducens reveals the structural origin of the redox-bohr effect

2LDO · Cytochrome C3: “Solution structure of triheme cytochrome ppca from geobacter sulfurreducens reveals the structural origin of…”. Solution nmr, 1 ligand (HEC), 1 pocket (best druggability 0.66). MolNFT v1 #43466 on GenesisL1: 3D…

PDB: 2LDO
Type: protein
Length: 71 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C3
UniProt: Q8GGK7
Ligands: HEC
Pockets: 1 · best druggability 0.66

Structure

solution nmr · 1 distinct chain · 27% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C3	protein	71	27% helix, 13% strand	Q8GGK7

Ligands and binding sites

HEC · Heme C · ligand · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	404	0.66	0.79	53	HEC

Modifications

Observed in the structure: 6 cofactor (heme c attachment).

Compared structures

2LDO · Solution structure of triheme cytochrome PpcA from Geobacter sulfurreducens reveals the… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8GGK7
Elsewhere: RCSB PDB 2LDO · PDBe 2LDO · UniProt Q8GGK7

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