MolNFT v1 · #4345 · DNA
The solution structure of a bay-region 1S-BENZ[A]ANTHRACENE oxide adduct at the N6 position of adenine of an oligodeoxynucleotide containing the human N-RAS codon 61 sequence
1DL4 · DNA (5'-D(*CP*GP*GP*AP*CP*(BZA)AP*AP*GP*AP*AP*G)-3'): “The solution structure of a bay-region 1S-BENZ[A]ANTHRACENE oxide adduct at the N6 position of adenine of an…”. Solution nmr, 1 ligand (BZA). MolNFT v1 #4345 on GenesisL1: 3D…
- PDB
- 1DL4
- Type
- DNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*GP*AP*CP*(BZA)AP*AP*GP*AP*AP*G)-3'); DNA…
- Ligands
- BZA
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*GP*GP*AP*CP*(BZA)AP*AP*GP*AP*AP*G)-3') | dna | 11 | — | — |
| B | DNA (5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3') | dna | 11 | — | — |
Ligands and binding sites
- BZA · 1R,2S,3R,4S-tetrahydro-benzo[a]anthracene-2,3,4-triol · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 489 Ų buried · 56 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 1DL4 · The solution structure of a bay-region 1S-BENZ[A]ANTHRACENE oxide adduct at the N6… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1DL4 · PDBe 1DL4
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