MolNFT v1 · #43428 · protein

Solution NMR structure of pab polii intein

2LCJ · Pab polc intein: “Solution NMR structure of pab polii intein”. Solution nmr, 2 pockets (best druggability 0.57). MolNFT v1 #43428 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2LCJ
Type: protein
Length: 185 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pab polc intein
EC: 2.7.7.7
UniProt: Q9V2F4
Pockets: 2 · best druggability 0.57

Structure

solution nmr · 1 distinct chain · 5% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pab polc intein (EC 2.7.7.7)	protein	185	5% helix, 50% strand	Q9V2F4

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	208	0.57	0.80	30	empty
2	64	0.29	0.73	22	empty

Compared structures

2LCJ · Solution NMR structure of Pab PolII Intein · the same entry in another collection · chain A against A, TM-score 1.00
Q9V2F4 · AlphaFold monomer V2.0 prediction for DNA polymerase II large subunit (Q9V2F4) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9V2F4
Elsewhere: RCSB PDB 2LCJ · PDBe 2LCJ · UniProt Q9V2F4

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