MolNFT v1 · #43289 · RNA
Structure of a 4X4 nucleotide RNA internal loop from an R2 retrotransposon
2L8F · RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3'): “Structure of a 4X4 nucleotide RNA internal loop from an R2 retrotransposon”. Solution nmr. MolNFT v1 #43289 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2L8F
- Type
- RNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3'); RNA…
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3') | rna | 11 | — | — |
| B | RNA (5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3') | rna | 11 | — | — |
Interfaces
1 interface between chains.
- A–B · 626 Ų buried · 41 hydrogen bonds · nucleic-nucleic
Compared structures
- 2L8F · Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2L8F · PDBe 2L8F
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