MolNFT v1 · #43195 · protein
Solution NMR structure of protein lipocalin 12 from rat epididymis
2L5P: “Solution NMR structure of protein lipocalin 12 from rat epididymis”. Solution nmr, 2 pockets (best druggability 0.63). MolNFT v1 #43195 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2L5P
- Type
- protein
- Length
- 175 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipocalin 12
- UniProt
- B3EY83
- Pockets
- 2 · best druggability 0.63
Structure
solution nmr · 1 distinct chain · 11% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipocalin 12 | protein | 175 | 11% helix, 39% strand | B3EY83 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 205 | 0.63 | 0.83 | 30 | empty |
| 2 | 87 | 0.39 | 0.77 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2L5P · Solution NMR structure of protein lipocalin 12 from rat epididymis · the same entry in another collection · chain A against A, TM-score 1.00
- B3EY83 · AlphaFold monomer V2.0 prediction for epididymal-specific lipocalin-12 (B3EY83) · a predicted model of the same protein · chain A against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3EY83
- Elsewhere: RCSB PDB 2L5P · PDBe 2L5P · UniProt B3EY83
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