MolNFT v1 · #43157 · protein + DNA
Structural insights into the ctar DNA recognition by the HIV-1 nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of nc
2L4L · HIV-1 nucleocapsid protein NCP7: “Structural insights into the ctar DNA recognition by the HIV-1 nucleocapsid protein: role of sugar…”. Solution nmr, 1 ligand (ZN). MolNFT v1 #43157 on GenesisL1: 3D structure, binding sites and…
- PDB
- 2L4L
- Type
- protein + DNA
- Length
- 49 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 nucleocapsid protein NCP7; 5'-D(*CP*TP*GP*G)-3'
- Ligands
- ZN
Structure
solution nmr · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HIV-1 nucleocapsid protein NCP7 | protein | 45 | 0% helix, 0% strand | — |
| B | 5'-D(*CP*TP*GP*G)-3' | dna | 4 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 561 Ų buried · 14 hydrogen bonds · protein-nucleic
Compared structures
- 2L4L · Structural insights into the cTAR DNA recognition by the HIV-1 Nucleocapsid protein: role… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2L4L · PDBe 2L4L
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