MolNFT v1 · #43000 · protein

Solution structure of the non-covalent complex of the ZNF216 A20 domain with ubiquitin

2L00 · ZFAND5 protein (zinc finger protein 216 (predicted)…: “Solution structure of the non-covalent complex of the ZNF216 A20 domain with ubiquitin”. Solution nmr, 1 ligand (ZN). MolNFT v1 #43000 on GenesisL1: 3D structure, binding sites…

PDB: 2L00
Type: protein
Length: 106 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ZFAND5 protein (zinc finger protein 216 (predicted), isoform CRA_A); Ubiquitin
UniProt: B5DF11, P61864
Ligands: ZN

Structure

solution nmr · 2 distinct chains · 29% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ZFAND5 protein (zinc finger protein 216 (predicted), isoform CRA_A)	protein	35	37% helix, 6% strand	B5DF11
B	Ubiquitin	protein	71	25% helix, 32% strand	P61864

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 411 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

2L00 · Solution structure of the non-covalent complex of the ZNF216 A20 domain with ubiquitin · the same entry in another collection · chain A against A, TM-score 1.00
B5DF11 · AlphaFold monomer V2.0 prediction for AN1-type zinc finger protein 5 (B5DF11) · a predicted model of the same protein · chain A against A, TM-score 0.71

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B5DF11
Every structure of UniProt P61864
Elsewhere: RCSB PDB 2L00 · PDBe 2L00 · UniProt B5DF11 · UniProt P61864

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