MolNFT v1 · #42944 · RNA

Rdc and rcsa refinement of an a-form RNA: improvements in major groove width

2KYD · RNA (5'-R(*CP*UP*AP*GP*UP*UP*AP*GP*CP*UP*AP*AP*CP*UP*AP*G)…: “Rdc and rcsa refinement of an a-form RNA: improvements in major groove width”. Solution nmr, 1 pocket (best druggability 0.36). MolNFT v1 #42944 on GenesisL1: 3D…

PDB: 2KYD
Type: RNA
Length: 32 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (5'-R(*CP*UP*AP*GP*UP*UP*AP*GP*CP*UP*AP*AP*CP*UP*AP*G)- 3')
Pockets: 1 · best druggability 0.36

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	RNA (5'-R(CPUPAPGPUPUPAPGPCPUPAPAPCPUPAPG)- 3')	rna	16	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	149	0.36	0.72	16	empty

Interfaces

1 interface between chains.

A–B · 766 Å² buried · 74 hydrogen bonds · nucleic-nucleic

Compared structures

2KYD · RDC and RCSA refinement of an A-form RNA: Improvements in Major Groove Width · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2KYD · PDBe 2KYD

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