MolNFT v1 · #42918 · RNA

Solution NMR structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostmycin complex

2KXM · RNA (27-mer): “Solution NMR structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostmycin complex”. Solution nmr, 1 ligand (RIO), 1 pocket (best druggability 0.54). MolNFT v1 #42918 on GenesisL1: 3D…

PDB: 2KXM
Type: RNA
Length: 27 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (27-mer)
Ligands: RIO
Pockets: 1 · best druggability 0.54

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (27-mer)	rna	27	—	—

Ligands and binding sites

RIO · Ribostamycin · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	269	0.54	0.77	21	RIO

Compared structures

2KXM · Solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2KXM · PDBe 2KXM

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