MolNFT v1 · #42778 · protein

Solution NMR structure of probable 30S ribosomal protein psrp-3 (YCF65-like protein) from synechocystis sp. (strain pcc 6803), northeast structural genomics consortium target target SGR46

2KT9: “Solution NMR structure of probable 30S ribosomal protein psrp-3 (YCF65-like protein) from synechocystis sp.…”. Solution nmr, 2 pockets (best druggability 0.29). MolNFT v1 #42778 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 2KT9
Type: protein
Length: 116 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable 30S ribosomal protein psrp-3
UniProt: Q55385
Pockets: 2 · best druggability 0.29

Structure

solution nmr · 1 distinct chain · 34% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable 30S ribosomal protein psrp-3	protein	116	34% helix, 23% strand	Q55385

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.29	0.75	11	empty
2	51	0.25	0.73	17	empty

Compared structures

2KT9 · Solution NMR Structure of Probable 30S Ribosomal Protein PSRP-3 (Ycf65-like protein) from… · the same entry in another collection · chain A against A, TM-score 1.00
Q55385 · AlphaFold monomer V2.0 prediction for probable 30S ribosomal protein psrp-3 (Q55385) · a predicted model of the same protein · chain A against A, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q55385
Elsewhere: RCSB PDB 2KT9 · PDBe 2KT9 · UniProt Q55385

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