MolNFT v1 · #42747 · protein
Solution structure of synechococcus sp. pcc 7002 hemoglobin
2KSC · Cyanoglobin: “Solution structure of synechococcus sp. pcc 7002 hemoglobin”. Solution nmr, 1 ligand (HEB), 2 pockets (best druggability 0.70). MolNFT v1 #42747 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2KSC
- Type
- protein
- Length
- 123 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyanoglobin
- UniProt
- Q8RT58
- Ligands
- HEB
- Pockets
- 2 · best druggability 0.70
Structure
solution nmr · 1 distinct chain · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyanoglobin | protein | 123 | 74% helix, 0% strand | Q8RT58 |
Ligands and binding sites
- HEB · Heme B/C · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 378 | 0.70 | 0.82 | 36 | HEB |
| 2 | 87 | 0.45 | 0.79 | 17 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 2KSC · Solution structure of Synechococcus sp. PCC 7002 hemoglobin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8RT58
- Elsewhere: RCSB PDB 2KSC · PDBe 2KSC · UniProt Q8RT58
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