MolNFT v1 · #42648 · protein
Ligand bound to a model peptide that mimics the open fusogenic form
2KP8: “Ligand bound to a model peptide that mimics the open fusogenic form”. Solution nmr, 1 ligand (XIG). MolNFT v1 #42648 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2KP8
- Type
- protein
- Length
- 216 residues
- Chains
- 3
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Model peptide
- Ligands
- XIG
Structure
solution nmr · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Model peptide | protein | 72 | 79% helix, 0% strand | — |
Ligands and binding sites
- XIG · 5-{[(4'-methoxybiphenyl-4-yl)methyl][(1S)-1,2,3,4-tetrahydronaphthalen-1-yl]carbamoyl}benzene-1,2,4-tricarboxylic acid · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- A–C · 1390 Ų buried · 16 hydrogen bonds · protein-protein
- A–B · 1359 Ų buried · 12 hydrogen bonds · protein-protein
- B–C · 1205 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 2KP8 · Ligand bound to a model peptide that mimics the open fusogenic form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2KP8 · PDBe 2KP8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.