MolNFT v1 · #42543 · protein

CU(I)-bound copk

2KM0 · Copper resistance protein K: “CU(I)-bound copk”. Solution nmr, 1 ligand (CU1), 1 pocket (best druggability 0.32). MolNFT v1 #42543 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2KM0
Type: protein
Length: 74 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Copper resistance protein K
UniProt: Q58AD3
Ligands: CU1
Pockets: 1 · best druggability 0.32

Structure

solution nmr · 1 distinct chain · 5% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Copper resistance protein K	protein	74	5% helix, 35% strand	Q58AD3

Ligands and binding sites

CU1 · Copper (I) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.32	0.76	12	empty

Compared structures

2KM0 · Cu(I)-bound CopK · the same entry in another collection · chain A against A, TM-score 1.00
Q58AD3 · AlphaFold monomer V2.0 prediction for copper resistance protein K (Q58AD3) · a predicted model of the same protein · chain A against A, TM-score 0.63

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58AD3
Elsewhere: RCSB PDB 2KM0 · PDBe 2KM0 · UniProt Q58AD3

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