MolNFT v1 · #42444 · protein

Cytoplasmic domain structure of BM2 proton channel from influenza B virus

2KJ1 · BM2 protein: “Cytoplasmic domain structure of BM2 proton channel from influenza B virus”. Solution nmr, 4 pockets (best druggability 0.75). MolNFT v1 #42444 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2KJ1
Type: protein
Length: 244 residues
Chains: 4
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: BM2 protein
UniProt: Q9WD75
Pockets: 4 · best druggability 0.75

Structure

solution nmr · 1 distinct chain · 80% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	BM2 protein	protein	61	80% helix, 3% strand	Q9WD75

Pockets

4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	107	0.75	0.95	23	empty
2	269	0.74	0.87	34	empty
3	351	0.59	0.76	34	empty
4	133	0.58	0.84	25	empty

Interfaces

6 interfaces between chains.

A–B · 1186 Å² buried · 7 hydrogen bonds · protein-protein
B–C · 1154 Å² buried · 2 hydrogen bonds · protein-protein
C–D · 1127 Å² buried · 4 hydrogen bonds · protein-protein
A–D · 1109 Å² buried · 7 hydrogen bonds · protein-protein
B–D · 71 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

2KJ1 · cytoplasmic domain structure of BM2 proton channel from influenza B virus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9WD75
Elsewhere: RCSB PDB 2KJ1 · PDBe 2KJ1 · UniProt Q9WD75

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