MolNFT v1 · #42397 · protein

Structure of the C-terminal non-repetitive domain of the spider dragline silk protein adf-3

2KHM · Fibroin-3: “Structure of the C-terminal non-repetitive domain of the spider dragline silk protein adf-3”. Solution nmr, 1 pocket (best druggability 0.39). MolNFT v1 #42397 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 2KHM
Type: protein
Length: 280 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fibroin-3
UniProt: Q16987
Pockets: 1 · best druggability 0.39

Structure

solution nmr · 1 distinct chain · 61% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Fibroin-3	protein	140	61% helix, 1% strand	Q16987

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	103	0.39	0.76	25	empty

Interfaces

1 interface between chains.

A–B · 2497 Å² buried · 11 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

2KHM · Structure of the C-terminal non-repetitive domain of the spider dragline silk protein… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q16987
Elsewhere: RCSB PDB 2KHM · PDBe 2KHM · UniProt Q16987

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