MolNFT v1 · #42378 · DNA
NMR structure of aflatoxin formamidopyrimidine alpha-anomer in duplex DNA
2KH3 · 5'-D(*CP*TP*AP*TP*(FAG)P*AP*TP*TP*CP*A)-3': “NMR structure of aflatoxin formamidopyrimidine alpha-anomer in duplex DNA”. Solution nmr. MolNFT v1 #42378 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2KH3
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*TP*AP*TP*(FAG)P*AP*TP*TP*CP*A)-3'; 5'-D(*TP*GP*AP*AP*TP*CP*AP*TP*AP*G)-3'
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*CP*TP*AP*TP*(FAG)P*AP*TP*TP*CP*A)-3' | dna | 10 | — | — |
| B | 5'-D(*TP*GP*AP*AP*TP*CP*AP*TP*AP*G)-3' | dna | 10 | — | — |
Interfaces
1 interface between chains.
- A–B · 529 Ų buried · 32 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 2KH3 · NMR Structure of Aflatoxin Formamidopyrimidine alpha-anomer in duplex DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2KH3 · PDBe 2KH3
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