MolNFT v1 · #42280 · protein
NMR structure of LP2086-B01
2KDY · Factor H binding protein variant B01_001: “NMR structure of LP2086-B01”. Solution nmr, 4 pockets (best druggability 0.61). MolNFT v1 #42280 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2KDY
- Type
- protein
- Length
- 261 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Factor H binding protein variant B01_001
- UniProt
- Q6VRY4
- Pockets
- 4 · best druggability 0.61
Structure
solution nmr · 1 distinct chain · 4% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Factor H binding protein variant B01_001 | protein | 261 | 4% helix, 45% strand | Q6VRY4 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 204 | 0.61 | 0.81 | 34 | empty |
| 2 | 136 | 0.49 | 0.79 | 30 | empty |
| 3 | 92 | 0.36 | 0.75 | 19 | empty |
| 4 | 58 | 0.26 | 0.73 | 18 | empty |
Compared structures
- 2KDY · NMR structure of LP2086-B01 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6VRY4
- Elsewhere: RCSB PDB 2KDY · PDBe 2KDY · UniProt Q6VRY4
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