MolNFT v1 · #42239 · protein

Solution structure of 30S ribosomal protein S8E; from methanothermobacter thermautotrophicus, northeaststructural genomics consortium (nesg) target TR71D

2KCP: “Solution structure of 30S ribosomal protein S8E; from methanothermobacter thermautotrophicus…”. Solution nmr, 1 pocket (best druggability 0.31). MolNFT v1 #42239 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2KCP
Type: protein
Length: 98 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 30S ribosomal protein S8E
UniProt: O26309
Pockets: 1 · best druggability 0.31

Structure

solution nmr · 1 distinct chain · 3% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	30S ribosomal protein S8E	protein	98	3% helix, 24% strand	O26309

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	52	0.31	0.77	14	empty

Compared structures

2KCP · SOLUTION STRUCTURE OF 30S RIBOSOMAL PROTEIN S8E; FROM Methanothermobacter… · the same entry in another collection · chain A against A, TM-score 1.00
O26309 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S8E (O26309) · a predicted model of the same protein · chain A against A, TM-score 0.57

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O26309
Elsewhere: RCSB PDB 2KCP · PDBe 2KCP · UniProt O26309

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