MolNFT v1 · #41684 · protein

NMR solution structure of homodimer protein SO_2176 from shewanella oneidensis. northeast structural genomics consortium target SOR77

2JUW · UPF0352 protein SO_2176: “NMR solution structure of homodimer protein SO_2176 from shewanella oneidensis. northeast structural genomics…”. Solution nmr, 3 pockets (best druggability 0.34). MolNFT v1 #41684 on GenesisL1: 3D…

PDB: 2JUW
Type: protein
Length: 160 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UPF0352 protein SO_2176
UniProt: Q8EF26
Pockets: 3 · best druggability 0.34

Structure

solution nmr · 1 distinct chain · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	UPF0352 protein SO_2176	protein	80	76% helix, 0% strand	Q8EF26

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	80	0.34	0.75	12	empty
2	55	0.31	0.76	16	empty
3	54	0.26	0.73	13	empty

Interfaces

1 interface between chains.

A–B · 2149 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

2JUW · NMR solution structure of homodimer protein SO_2176 from Shewanella oneidensis. Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
Q8EF26 · AlphaFold monomer V2.0 prediction for UPF0352 protein SO_2176 (Q8EF26) · a predicted model of the same protein · chain A against A, TM-score 0.77

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8EF26
Elsewhere: RCSB PDB 2JUW · PDBe 2JUW · UniProt Q8EF26

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