MolNFT v1 · #41643 · RNA

Solution structure of the frameshift-inducing RNA stem-loop in SIV

2JTP · SIV17-50 RNA (34-mer): “Solution structure of the frameshift-inducing RNA stem-loop in SIV”. Solution nmr, 1 pocket (best druggability 0.38). MolNFT v1 #41643 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2JTP
Type: RNA
Length: 34 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SIV17-50 RNA (34-mer)
Pockets: 1 · best druggability 0.38

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SIV17-50 RNA (34-mer)	rna	34	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	142	0.38	0.73	12	empty

Compared structures

2JTP · Solution Structure of the Frameshift-Inducing RNA Stem-Loop in SIV · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2JTP · PDBe 2JTP

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