MolNFT v1 · #4120 · DNA
Solution structure of a cisplatin-induced [CATAGCTATG]2 interstrand cross-link
1DDP · DNA (5'-D(*CP*AP*TP*AP*GP*CP*TP*AP*TP*G)-3'): “Solution structure of a cisplatin-induced [CATAGCTATG]2 interstrand cross-link”. Solution nmr, 1 ligand (CPT). MolNFT v1 #4120 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1DDP
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*AP*TP*AP*GP*CP*TP*AP*TP*G)-3')
- Ligands
- CPT
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*CP*AP*TP*AP*GP*CP*TP*AP*TP*G)-3') | dna | 10 | — | — |
Ligands and binding sites
- CPT · Cisplatin · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 554 Ų buried · 51 hydrogen bonds · nucleic-nucleic
Compared structures
- 1DDP · Solution structure of a CISPLATIN-INDUCED [CATAGCTATG]2 Interstrand cross-link · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1DDP · PDBe 1DDP
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