MolNFT v1 · #41183 · protein
Crystal structure of enterococcus faecium glutamate racemase in complex with citrate
2JFV: “Crystal structure of enterococcus faecium glutamate racemase in complex with citrate”. X-ray diffraction, 2 pockets (best druggability 0.56). MolNFT v1 #41183 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2JFV
- Type
- protein
- Length
- 270 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamate racemase
- EC
- 5.1.1.3
- UniProt
- Q3XZW8
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamate racemase (EC 5.1.1.3) | protein | 270 | 46% helix, 17% strand | Q3XZW8 |
Ligands and binding sites
- FLC · Citrate anion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 182 | 0.56 | 0.80 | 29 | FLC |
| 2 | 57 | 0.28 | 0.74 | 17 | empty |
Compared structures
- 2JFV · Crystal structure of Enterococcus faecium glutamate racemase in complex with citrate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3XZW8
- Elsewhere: RCSB PDB 2JFV · PDBe 2JFV · UniProt Q3XZW8
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