MolNFT v1 · #41051 · protein
Crystal structure of human insulin degrading enzyme complexed with co- purified peptides.
2JBU · Insulin-degrading enzyme: “Crystal structure of human insulin degrading enzyme complexed with co- purified peptides.”. X-ray diffraction, 20 pockets (best druggability 0.79). MolNFT v1 #41051 on GenesisL1: 3D structure, binding…
- PDB
- 2JBU
- Type
- protein
- Length
- 1,942 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Insulin-degrading enzyme; Co-purified peptide
- EC
- 3.4.24.56
- UniProt
- Q5T5N2
- Pockets
- 20 · best druggability 0.79
Structure
x-ray diffraction · 3 distinct chains · 43% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Insulin-degrading enzyme (EC 3.4.24.56) | protein | 962 | 44% helix, 20% strand | Q5T5N2 |
| B | Insulin-degrading enzyme (EC 3.4.24.56) | protein | 960 | 44% helix, 20% strand | Q5T5N2 |
| C, D | Co-purified peptide | protein | 10 | 0% helix, 30% strand | — |
Ligands and binding sites
- DIO · 1,4-diethylene dioxide · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1029 | 0.79 | 0.80 | 97 | empty |
| 2 | 1099 | 0.78 | 0.80 | 131 | DIO |
| 3 | 647 | 0.72 | 0.79 | 81 | DIO |
| 4 | 423 | 0.71 | 0.82 | 38 | empty |
| 5 | 480 | 0.71 | 0.81 | 40 | empty |
Interfaces
3 interfaces between chains.
- A–B · 820 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 675 Ų buried · 20 hydrogen bonds · protein-protein
- B–D · 670 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 2JBU · Crystal structure of human insulin degrading enzyme complexed with co- purified peptides. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5T5N2
- Elsewhere: RCSB PDB 2JBU · PDBe 2JBU · UniProt Q5T5N2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.