MolNFT v1 · #40943 · protein
Structure of NP275, a pentapeptide repeat protein from nostoc punctiforme
2J8I: “Structure of NP275, a pentapeptide repeat protein from nostoc punctiforme”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.55). MolNFT v1 #40943 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2J8I
- Type
- protein
- Length
- 222 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NP275
- Ligands
- CL
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NP275 | protein | 106 | 9% helix, 17% strand | — |
| B | NP275 | protein | 116 | 8% helix, 16% strand | — |
Ligands and binding sites
- CL · Chloride ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 179 | 0.55 | 0.80 | 33 | empty |
Interfaces
1 interface between chains.
- A–B · 344 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 2J8I · Structure of NP275, a pentapeptide repeat protein from Nostoc punctiforme · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2J8I · PDBe 2J8I
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