MolNFT v1 · #4090 · protein
Crystal structure of the arf-gap domain and ankyrin repeats of papbeta.
1DCQ · PYK2-associated protein beta: “Crystal structure of the arf-gap domain and ankyrin repeats of papbeta.”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.37). MolNFT v1 #4090 on GenesisL1: 3D structure, binding sites…
- PDB
- 1DCQ
- Type
- protein
- Length
- 276 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PYK2-associated protein beta
- UniProt
- Q7SIG6
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PYK2-associated protein beta | protein | 276 | 45% helix, 5% strand | Q7SIG6 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.37 | 0.76 | 18 | empty |
Compared structures
- 1DCQ · Crystal structure of the arf-gap domain and ankyrin repeats of papbeta. · the same entry in another collection · chain A against A, TM-score 1.00
- Q7SIG6 · AlphaFold monomer V2.0 prediction for arf-gap with SH3 domain, ank repeat and pH… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7SIG6
- Elsewhere: RCSB PDB 1DCQ · PDBe 1DCQ · UniProt Q7SIG6
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