MolNFT v1 · #40880 · protein
N-terminal SH3 domain of cms (CD2AP human homolog)
2J6K · CD2-associated protein: “N-terminal SH3 domain of cms (CD2AP human homolog)”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #40880 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2J6K
- Type
- protein
- Length
- 684 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CD2-associated protein
- UniProt
- Q9Y5K6
- Ligands
- NA
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L | CD2-associated protein | protein | 57 | 5% helix, 49% strand | Q9Y5K6 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
13 interfaces between chains.
- I–J · 396 Ų buried · 6 hydrogen bonds · protein-protein
- C–D · 389 Ų buried · 5 hydrogen bonds · protein-protein
- E–F · 385 Ų buried · 4 hydrogen bonds · protein-protein
- A–B · 380 Ų buried · 5 hydrogen bonds · protein-protein
- G–H · 366 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 2J6K · N-terminal SH3 domain of cms (CD2AP human homolog) · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y5K6
- Elsewhere: RCSB PDB 2J6K · PDBe 2J6K · UniProt Q9Y5K6
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