MolNFT v1 · #40724 · protein
Ptyr bound form of sdp-1
2J17 · Tyrosine-protein phosphatase YIL113W: “Ptyr bound form of sdp-1”. X-ray diffraction, 2 ligands (PTR, MG). MolNFT v1 #40724 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2J17
- Type
- protein
- Length
- 289 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine-protein phosphatase YIL113W
- EC
- 3.1.3.48
- UniProt
- P40479
- Ligands
- PTR, MG
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine-protein phosphatase YIL113W (EC 3.1.3.48) | protein | 144 | 41% helix, 14% strand | P40479 |
| B | Tyrosine-protein phosphatase YIL113W (EC 3.1.3.48) | protein | 145 | 39% helix, 14% strand | P40479 |
Ligands and binding sites
- PTR · O-phosphotyrosine · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 575 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40479
- Elsewhere: RCSB PDB 2J17 · PDBe 2J17 · UniProt P40479
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