MolNFT v1 · #40285 · protein

Crystal structure of protein SPO2555 from silicibacter pomeroyi, pfam DUF1028

2IMH · Hypothetical protein unp Q5LQD5_SILPO: “Crystal structure of protein SPO2555 from silicibacter pomeroyi, pfam DUF1028”. X-ray diffraction, 5 pockets (best druggability 0.80). MolNFT v1 #40285 on GenesisL1: 3D structure, binding…

PDB: 2IMH
Type: protein
Length: 443 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein unp Q5LQD5_SILPO
UniProt: Q5LQD5
Pockets: 5 · best druggability 0.80

Structure

x-ray diffraction · 2 distinct chains · 34% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein unp Q5LQD5_SILPO	protein	226	33% helix, 29% strand	Q5LQD5
B	Hypothetical protein unp Q5LQD5_SILPO	protein	217	34% helix, 29% strand	Q5LQD5

Pockets

5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1084	0.80	0.81	87	empty
2	52	0.71	0.99	19	empty
3	91	0.57	0.86	21	empty
4	152	0.50	0.78	20	empty
5	86	0.40	0.78	15	empty

Interfaces

1 interface between chains.

A–B · 1869 Å² buried · 28 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

2IMH · Crystal structure of protein SPO2555 from Silicibacter pomeroyi, Pfam DUF1028 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5LQD5
Elsewhere: RCSB PDB 2IMH · PDBe 2IMH · UniProt Q5LQD5

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