MolNFT v1 · #40180 · protein
Anabaena sensory rhodopsin transducer
2II8 · Anabaena sensory rhodopsin transducer protein: “Anabaena sensory rhodopsin transducer”. X-ray diffraction, 7 pockets (best druggability 0.76). MolNFT v1 #40180 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2II8
- Type
- protein
- Length
- 758 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Anabaena sensory rhodopsin transducer protein
- UniProt
- Q8YSC3
- Pockets
- 7 · best druggability 0.76
Structure
x-ray diffraction · 6 distinct chains · 3% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Anabaena sensory rhodopsin transducer protein | protein | 97 | 3% helix, 54% strand | Q8YSC3 |
| B | Anabaena sensory rhodopsin transducer protein | protein | 104 | 3% helix, 50% strand | Q8YSC3 |
| C | Anabaena sensory rhodopsin transducer protein | protein | 92 | 3% helix, 54% strand | Q8YSC3 |
| D | Anabaena sensory rhodopsin transducer protein | protein | 98 | 3% helix, 51% strand | Q8YSC3 |
| E, G, H | Anabaena sensory rhodopsin transducer protein | protein | 92 | 3% helix, 57% strand | Q8YSC3 |
| F | Anabaena sensory rhodopsin transducer protein | protein | 91 | 3% helix, 56% strand | Q8YSC3 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1138 | 0.76 | 0.78 | 144 | empty |
| 2 | 80 | 0.49 | 0.83 | 17 | empty |
| 3 | 184 | 0.48 | 0.76 | 19 | empty |
| 4 | 180 | 0.47 | 0.75 | 36 | empty |
| 5 | 83 | 0.44 | 0.81 | 19 | empty |
Interfaces
15 interfaces between chains.
- A–B · 794 Ų buried · 13 hydrogen bonds · protein-protein
- F–H · 679 Ų buried · 12 hydrogen bonds · protein-protein
- C–E · 674 Ų buried · 12 hydrogen bonds · protein-protein
- B–H · 667 Ų buried · 10 hydrogen bonds · protein-protein
- D–G · 656 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 2II8 · Anabaena sensory rhodopsin transducer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8YSC3
- Elsewhere: RCSB PDB 2II8 · PDBe 2II8 · UniProt Q8YSC3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.