MolNFT v1 · #40174 · protein
Crystal structure of alpha-11 giardin
2II2: “Crystal structure of alpha-11 giardin”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.61). MolNFT v1 #40174 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2II2
- Type
- protein
- Length
- 304 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-11 giardin
- UniProt
- Q4VPP2
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-11 giardin | protein | 304 | 72% helix, 0% strand | Q4VPP2 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.61 | 0.89 | 16 | empty |
| 2 | 128 | 0.49 | 0.79 | 21 | empty |
| 3 | 63 | 0.37 | 0.79 | 17 | SO4 |
| 4 | 93 | 0.35 | 0.75 | 17 | empty |
Compared structures
- 2II2 · Crystal Structure of Alpha-11 Giardin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4VPP2
- Elsewhere: RCSB PDB 2II2 · PDBe 2II2 · UniProt Q4VPP2
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