MolNFT v1 · #40082 · protein
Crystal structure of metalloprotein yiix from escherichia COLI O157:H7, DUF1105
2IF6 · Hypothetical protein yiix: “Crystal structure of metalloprotein yiix from escherichia COLI O157:H7, DUF1105”. X-ray diffraction, 1 ligand (UNX), 4 pockets (best druggability 0.80). MolNFT v1 #40082 on GenesisL1: 3D structure…
- PDB
- 2IF6
- Type
- protein
- Length
- 362 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein yiix
- UniProt
- Q8X778
- Ligands
- UNX
- Pockets
- 4 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein yiix | protein | 182 | 35% helix, 24% strand | Q8X778 |
| B | Hypothetical protein yiix | protein | 180 | 34% helix, 24% strand | Q8X778 |
Ligands and binding sites
- UNX · Unknown atom or ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 141 | 0.80 | 0.96 | 24 | empty |
| 2 | 294 | 0.76 | 0.88 | 41 | empty |
| 3 | 147 | 0.46 | 0.76 | 16 | empty |
| 4 | 96 | 0.38 | 0.76 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 247 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 2IF6 · Crystal structure of metalloprotein yiiX from Escherichia coli O157:H7, DUF1105 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8X778
- Elsewhere: RCSB PDB 2IF6 · PDBe 2IF6 · UniProt Q8X778
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