MolNFT v1 · #40012 · DNA
NMR structures of the expanded DNA 10BP XTGXTAXCXGCXAXGT:XACTXGCGXTAXCA
2ICZ · 5'-D(*(XTY)P*GP*(XTY)P*AP*(XCS)P*(XGA)P*CP*(XAE)P*(XGA)…: “NMR structures of the expanded DNA 10BP XTGXTAXCXGCXAXGT:XACTXGCGXTAXCA”. Solution nmr. MolNFT v1 #40012 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2ICZ
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*(XTY)P*GP*(XTY)P*AP*(XCS)P*(XGA)P*CP*(XAE)P*(XGA) P*T)-3'…
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*(XTY)P*GP*(XTY)P*AP*(XCS)P*(XGA)P*CP*(XAE)P*(XGA) P*T)-3' | dna | 10 | — | — |
| B | 5'-D(*(XAE)P*CP*TP*(XGA)P*CP*GP*(XTY)P*AP*(XCS)P*A)-3' | dna | 10 | — | — |
Interfaces
1 interface between chains.
- A–B · 554 Ų buried · 47 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 10 modified (nucleotide modification).
Compared structures
- 2ICZ · NMR Structures of the Expanded DNA 10bp xTGxTAxCxGCxAxGT:xACTxGCGxTAxCA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2ICZ · PDBe 2ICZ
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